James W. Brown - Principles of Microbial Diversity

11 Chapter 10Figure 10.1 Phylogenetic tree of the bacterial phyla, with the phylum Proteobact...Figure 10.2 Phylogenetic tree of representative proteobacteria, with each of the...Figure 10.3 Phylogenetic tree of representative Alphaproteobacteria. doi:10.1128...Figure 10.4 Phase-contrast micrograph of Rhodomicrobium vannielii, showing polar...Figure 10.5 Life cycle of Caulobacter crescentus. Flagellated swarmer cells tran...Figure 10.6 Alfalfa root nitrogen-fixing nodules. (Courtesy of Ninjatacoshell, h...Figure 10.7 Egg of the wasp Trichogramma kaykai. The brightly stained dots conce...Figure 10.8 Phylogenetic tree of representative Betaproteobacteria. doi:10.1128/...Figure 10.9 Diagnostic test for southern bacterial wilt. Cut off a section of th...Figure 10.10 A river polluted by acid mine drainage and the resulting overgrowth...Figure 10.11 Phase-contrast micrograph of Sphaerotilus natans. Notice the indivi...Figure 10.12 Phylogenetic tree of representative γ-proteobacteria. doi:10.1128/9...Figure 10.13 Electron micrograph of the familiar bacterium Escherichia coli. Sho...Figure 10.14 A typical aphid, host of the bacterial symbiont Buchnera aphidicola...Figure 10.15 Two filaments of Beggiatoa alba (the thinner vertical filament is i...Figure 10.16 Electron micrograph of Azotobacter vinelandii cysts. (Reprinted fro...Figure 10.17 Bright-field micrograph of Chromatium okenii (a close relative of C...Figure 10.18 Phylogenetic tree of representative δ-proteobacteria. doi:10.1128/9...Figure 10.19 Scanning electron micrograph of Desulfovibrio desulfuricans. (Sourc...Figure 10.20 Close-up photograph of simple Myxococcus xanthus fruiting bodies. (...Figure 10.21 Life cycle of Bdellovibrio bacteriovorans, assembled from scanning ...Figure 10.22 Phylogenetic tree of representative ε-proteobacteria. doi:10.1128/9...Figure 10.23 Shadow-cast electron micrograph of Helicobacter pylori. Notice the ...Figure 10.24 The deep-sea hydrothermal vent scaly snail Crysomallon squamiferum....Figure 10.25 Simplified representation of the electron transport chain. The oxid...

12 Chapter 11Figure 11.1 Phylogenetic tree of the bacterial phyla, with the two phyla of (pre...Figure 11.2 Phylogenetic tree of representative members of the Firmicutes. doi:1...Figure 11.3 Phase-contrast micrographs of Bacillus cereus (a.k.a. Arthromitis) g...Figure 11.4 Light micrograph of Gram-stained Clostridium botulinum. Notice the t...Figure 11.5 Phase-contrast micrograph of Leuconostoc mesenteroides. (Source: U.S...Figure 11.6 Mycoplasma mobile, showing the typical pear-shaped morphology of the...Figure 11.7 Fluorescent antibody of the parasitic flagellate Trichomonas vaginal...Figure 11.8 Phylogenetic tree of representative actinobacteria. doi:10.1128/9781...Figure 11.9 Scanning electron micrograph of snapping division in Arthrobacter gl...Figure 11.10 Overlay of phase-contrast and red and green fluorescent images of s...Figure 11.11 Stained sample of human tissue (blue) infected with Mycobacterium u...Figure 11.12 Scanning electron micrograph of Thermoleophilum album resting on a ...

13 Chapter 12Figure 12.1 Phylogenetic tree of the bacterial phyla, with the bacteroids and sp...Figure 12.2 Phylogenetic tree of representative members of the Spirochaetae. doi...Figure 12.3 Shadow-cast electron micrograph of a typical spirochete, showing the...Figure 12.4 (Top) A typical termite and a gastrointestinal tract dissected from ...Figure 12.5 Treponema denticola. (A and B) Fluorescent micrographs and (C) elect...Figure 12.6 Electron micrograph of Borrelia recurrentis. This spirochete is not ...Figure 12.7 Electron micrograph of Leptospira biflexa. The cell is wrapped in a ...Figure 12.8 Phylogenetic tree of representative bacteroids. doi:10.1128/97815558...Figure 12.9 Scanning electron micrograph of Bacteroides thetaiotaomicron. (Court...Figure 12.10 Phase-contrast micrograph of Flavobacterium johnsoniae. (Reprinted ...Figure 12.11 Scanning electron micrograph of Cytophaga hutchinsonii cells digest...Figure 12.12 Flagellar motility. Flagella are helical fibers, analogous to prope...Figure 12.13 Vibrios or spirilla are flagellated organisms that recapture some o...Figure 12.14 Gliding motility in some organisms is driven by secretion of polysa...Figure 12.15 Gliding motility in some organisms is driven by adhesins that move ...Figure 12.16 Twitching motility is directed by the extension of pili, which adhe...Figure 12.17 The honeycomb arrays inside the cytoplasm of this dividing Microcys...Figure 12.18 Motility by spirochetes. Rotation of the rigid helical cell body wi...Figure 12.19 Model of Spiroplasma motility. Kinks, where the helix switches from...

14 Chapter 13Figure 13.1 Phylogenetic tree of the bacterial phyla, with the phyla Chlamydia, ...Figure 13.2 Phylogenetic tree of the genera of Deinococcus-Thermus. doi:10.1128/...Figure 13.3 Kill curves of Escherichia coli versus Deinococcus radiodurans upon ...Figure 13.4 Electron micrograph (thin section) of dividing Deinococcus radiodura...Figure 13.5 Octopus Spring, Yellowstone National Park, from which Thermus aquati...Figure 13.6 Thermus aquaticus, thin-section electron micrograph. Oval cells are ...Figure 13.7 Phylogenetic tree of representative members of the Chlamydiae. doi:1...Figure 13.8 The chlamydial developmental cycle. The small, infectious elementary...Figure 13.9 Trachoma. Notice the granular, everted eyelids. This patient is unus...Figure 13.10 Protochlamydia amoebophila (pink) in two cells of its host, Acantha...Figure 13.11 Phylogenetic tree of the genera of Planctomycetes. doi:10.1128/9781...Figure 13.12 Phase-contrast micrograph of a rosette of Planctomyces bekefii. (Fr...Figure 13.13 Electron micrograph of Planctomyces bekefii showing the external fi...Figure 13.14 Phase-contrast micrograph of Blastopirellula marina rosettes. (From...Figure 13.15 Thin-section electron micrograph of Blastopirellula marina. The dar...Figure 13.16 Negatively stained electron micrograph of Isosphaera, with buds for...Figure 13.17 Thin-section electron micrograph of Isosphaera. The intracellular m...Figure 13.18 Thin-section electron micrograph of Brocadia anammoxidans. The “rib...Figure 13.19 Phase-contrast micrograph of Gemmata obscuriglobus. Notice the budd...Figure 13.20 Thin-section electron micrograph of Gemmata obscuriglobus. Ribosome...

15 Chapter 14Figure 14.1 Phylogenetic tree of the Bacteria, with the main phylogenetic branch...Figure 14.2 Phylogenetic tree of the phylum Verrucomicrobia, including cultivate...Figure 14.3 Scanning electron micrograph of Verrucomicrobium spinosum. (Reprinte...Figure 14.4 Thin-section electron micrograph of Prosthecobacter dejongeii, a clo...Figure 14.5 Phylogenetic tree of the phylum Acidobacteria, including cultivated ...Figure 14.6 Fluorescence micrograph of Acidobacterium capsulatum. (Source: U.S. ...Figure 14.7 Phylogenetic tree of the phylum Nitrospira, including cultivated spe...Figure 14.8 Scanning electron micrograph of Leptospirillum ferrooxidans. (Courte...Figure 14.9 Electron micrograph of Magnetobacterium bavaricum. (From The Scienti...Figure 14.10 Phylogenetic tree of the phylum Fusobacteria, including cultivated ...Figure 14.11 Gram stain of Fusobacterium nucleatum. (Gini G. 2006. Gram-stained ...Figure 14.12 Phylogenetic tree of the phylum OP11, for which no cultivated speci...Figure 14.13 The author collecting samples in Obsidian Pool, Yellowstone Nationa...Figure 14.14 Phylogenetic tree of the phylum SR1, known only from two similar (b...Figure 14.15 Phylogenetic tree of the family Enterobacteriaceae, including an ar...

16 Chapter 15Figure 15.1 Phylogenetic tree of the Archaea. Extremely halophilic members are h...Figure 15.2 Phylogenetic tree of representatives of the phylum Crenarchaeota doi...Figure 15.3 “The Pit” (an informal name), an acidic hot spring in the Mud Volcan...Figure 15.4 Shadow-cast electron micrograph of Thermoproteus tenax. (Courtesy of...Figure 15.5 Scanning electron micrograph of Pyrodictium occultum. (Courtesy of G...Figure 15.6 Negative-stain electron micrograph of Sulfolobus solfataricus infect...Figure 15.7 Phylogenetic tree of representatives of the phylum Euryarchaeota. Ex...Figure 15.8 Methanogenesis from C1 compounds (top), or acetate or methanol (lowe...Figure 15.9 Scanning electron micrograph of Methanocaldococcus jannaschii. (Sour...Figure 15.10 Scanning electron micrograph of Methanothermobacter thermautotrophi...Figure 15.11 Phase-contrast image of Methanosarcina barkeri-like organisms in an...Figure 15.12 A bloom of halophilic Archaea in a saltern in Namibia. (Courtesy of...Figure 15.13 Deep-sea “black smoker” hydrothermal vents, the habitat of Pyrococc...Figure 15.14 Shadow-cast electron micrograph of Archaeoglobus fulgidus. (Courtes...Figure 15.15 Scanning electron micrograph of Thermoplasma acidophilum. (Dennis S...Figure 15.16 Obsidian Pool, Yellowstone National Park, samples of which yielded ...Figure 15.17 Scanning electron micrograph of purified Korarchaeum cryptophilum f...Figure 15.18 Shadow-cast micrograph of Nanoarchaeum equitans (small irregular co...