Semantic Web for Effective Healthcare Systems

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Recently, the Semantic Web has gained huge popularity to address these challenges. Semantic web technologies have the opportunity to transform the way healthcare providers utilize technology to gain insights and knowledge from their data and make decisions. Both big data and semantic web technologies can complement each other to address the challenges and add intelligence to healthcare management systems.
The aim of this book is to analyze the current status on how Semantic Web is used to solve the health data integration and interoperability problem, how it provides advanced data linking capabilities that can improve search and retrieval of medical data. There are chapters in the book which analyze the tools and approaches to semantic health data analysis and knowledge discovery. The book discusses the role of semantic technologies in extracting and transforming healthcare data before storing it in repositories. It also discusses different approaches for integrating heterogeneous healthcare data. To summarize, the book will help readers understand key concepts in semantic web applications for biomedical engineering and healthcare.

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Ontology tree is constructed with different levels for each such that F forms - фото 14 Ontology tree is constructed with different levels for each such that F forms - фото 15

Ontology tree is constructed with different levels for each such that F forms the higher level, and T forms the next level for the corresponding F, as shown in Figure 1.9.

Figure 19 Domain ontology modeling for features The LDA weight of each term - фото 16

Figure 1.9 Domain ontology modeling for features.

The LDA weight of each term is included in the Ontology representation. Ontology is used to construct the index through concept reasoning.

1.5.3 OnSI Model Evaluation

OnSI evaluation module includes query processing, tagging, and Ontology mapping for feature scoring. It retrieves the relevant feature (or topic) and its score from the built domain Ontology for the set of query terms.

(i) Query Processing

Searching data is made easier and speed up when they are contextually grouped along with indexing. Else searching data in relational schema is quite expensive. Each query document is pre-processed and the PoS tagged nouns are sent to Ontology.

(ii) Ontology Mapping

The resultant features from the domain Ontology are mapped to the closest feature using their feature score. It enables to retrieve the relevant feature and its score for the query documents. Sparql, a XML-based query language is used to retrieve data from the built Ontology. It is described as follows:

Let Q be the set of query documents of product/service reviews written for F features using T terms. These documents are pre-processed and the nouns are extracted from them. Each query document is represented by q = {t 1, t 2, …, t n}, where t is the term representing the feature f . The function M( t, f ) maps each term t ϵ T with the feature f ϵ F and returns the fScore . This module addresses the four different types of queries, and it is shown in Figure 1.10.

Figure 110 Ontology mapping using OnSI model iii Retrieval Process From - фото 17

Figure 1.10 Ontology mapping using OnSI model.

(iii) Retrieval Process From Ontology

When Ontology is queried using Sparql, the query language for Ontology, there could be four different types of queries. The procedure for retrieving data from Ontology is explained:

Type 1 Terms under only one feature If all terms t 1 t 2 t nmapped to the - фото 18

Type 1: Terms under only one feature

If all terms t 1, t 2, …, t nmapped to the same feature f , then f is returned as the result with the cumulative LDA scores of each term. For all i, 1 < i < n, there exists f such that

For example treatment is good is considered Type 1 query Here the word - фото 19

For example, “treatment is good” is considered Type 1 query. Here, the word treatment is extracted. It comes under the feature (or topic) “Medicare,” and it is returned as the feature.

Type 2: Terms under multiple features, each term under only one feature

If terms { ti } mapped to feature + fa ϵ F, and terms { tj } mapped to feature fb ϵ F, then f whose fScore is higher is returned. In this case, the cumulative fScore is computed for each feature f and the feature with higher score is selected. Cumulative fScore of feature f is determined by the sum of LDA scores of terms corresponding to the feature f .

For example the treatment is good but the rent is costly is considered as - фото 20

For example, “the treatment is good but the rent is costly” is considered as Type 2 query. Here, the terms treatment and rent are extracted. The term treatment comes under the topic “Medicare,” while the terms rent comes under the topic “Cost.”

Type 3: Terms under multiple features, one term under more than one feature

If a term ti is mapped to feature fa , fb ϵ F, then nearest terms, say t i-1or t i+1is considered to determine the feature category of term ti present in the document. In this case, the term is associated to a feature by comparing the fScore of each feature. The cumulative fScore is calculated for each feature f , and the resultant strong feature(s) is returned as the result. Cumulative fScore of feature f is determined by the sum of LDA scores of terms corresponding to the feature f .

For example the rooms are maintained neatly but the room rent is costly is - фото 21

For example, “the rooms are maintained neatly but the room rent is costly” is considered Type 3 query. Here, the terms rooms , room , and rent are extracted. The term room comes under both the topics “Infrastructure” and “Cost,” and the term rent comes under the topic “cost.” The term room needs to be fixed under a single topic (either infrastructure or cost). It is done by calculating the cumulative scores of features (or topics) under which the term occurs. Suppose, LDAscore(room, Infrastructure) = 0.17, LDAscore(room, Cost) = 0.38, and LDAscore(rent, Cost) = 0.26. Then cum_fScore(f = “Infrastructure”) is 0.17, and the cum_fScore(f = “Cost”) is 0.64. Since 0.64 > 0.17, the term room is assigned the feature as “Cost” in this context.

Type 4: Term not present in the Ontology

If given term is not present, new LDA score is computed for it and update-Ontology() is used for the new term. If ontoMap( t ) is null , where t ϵ T, then the Ontology needs to be updated with the new term. CFS LDAmodeling is done again for the Ontology update. The process of querying is repeated as one of the other three types described earlier.

1.5.4 Metrics Analysis

Accuracy is measured as a performance measure for the number of terms correctly identified under the topic (or features). However, the model is further evaluated by the metrics such as precision, recall, and f-measure. Precision defines how precise the model is, and recall defines how complete the model is. It is represented as a confusion matrix, which contains information about actual and predicted results, as shown in Table 1.1.

Table 1.1 Confusion matrix.

Predicted positive Predicted negative
Actual positive TP FIN
Actual negative FP TN

where

TP : the number of correct classifications of the positive examples (true positive)

FN : the number of incorrect classifications of positive examples (false negative)

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