Сергей Ястребов - От атомов к древу. Введение в современную науку о жизни

Roger A. J., Simpson A. G. B. Evolution: revisiting the root of the eukaryote tree // Current Biology , 2009, V. 19, № 4, R165 — R167.

Burki et al. , 2007.

Baldauf , 2008.

Hampl V. et al. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic «supergroups» // Proceedings of the National Academy of Sciences , 2009, V. 106, № 10, 3859–3864.

He D. et al. An alternative root for the eukaryote tree of life // Current Biology , 2014, V. 24, № 4, 465–470.

Adl et al. , 2012.

Cavalier-Smith T. Deep phylogeny, ancestral groups and the four ages of life // Philosophical Transactions of the Royal Society of London, B: Biological Sciences , 2010, V. 365, № 1537, 111–132.

Cavalier-Smith T. Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa // European Journal of Protistology , 2013, V. 49, № 2, 115–178.

Cavalier-Smith T. Symbiogenesis: mechanisms, evolutionary consequences, and systematic implications // Annual Review of Ecology, Evolution, and Systematics , 2013a, V. 44, 145–172.

Cavalier-Smith T. et al. Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa // Molecular Phylogenetics and Evolution , 2014, V. 81, 71–85.

Cavalier-Smith T. Origin of animal multicellularity: precursors, causes, consequences — the choanoflagellate / sponge transition, neurogenesis and the Cambrian explosion // Philosophical Transactions of the Royal Society, B: Biological Sciences , 2017, V. 372, 1713.

Cavalier-Smith , 2009.

Cavalier-Smith T. The origins of plastids // Biological Journal of the Linnean Society , 1982, V. 17, № 3, 289–306.

Cavalier-Smith , 2013a.

Keeling P. J. Diversity and evolutionary history of plastids and their hosts // American Journal of Botany , 2004, V. 91, № 10, 1481–1493.

Burki F. The eukaryotic tree of life from a global phylogenomic perspective // Cold Spring Harbor. Perspectives in Biology , 2014, V. 6, № 5, a016147.

Adl et al. , 2012.

Burki F., Shalchian-Tabrizi K., Pawlowski J. Phylogenomics reveals a new ‘megagroup’ including most photosynthetic eukaryotes // Biology Letters , 2008, V. 4, № 4, 366–369.

Hampl et al. , 2009.

Adl et al. , 2012.

Germot A., Philippe H. Critical analysis of eukaryotic phylogeny: a case study based on the HSP70 family // Journal of Eukaryotic Microbiology , 1999, V. 46, № 2, 116–124.

Germot, Philippe , 1999.

Philippe H., Germot A., Moreira D. The new phylogeny of eukaryotes // Current Opinion in Genetics & Development , 2000, V. 10, № 6, 596–601.

Philippe H. Early — branching or fast — evolving eukaryotes? An answer based on slowly evolving positions // Proceedings of the Royal Society of London, B: Biological Sciences , 2000, V. 267, № 1449, 1213–1221.

Philippe , 2000.

Philippe et al. , 2000. «Примитивность» — двусмысленный термин. В данном случае Эрве Филипп называет примитивностью раннее отхождение группы от общего ствола (а не простоту организации или сходство с общим предком — такие значения термина «примитивность» тоже существуют, но здесь они неактуальны).

Baldauf , 2003.

Завадский К. М., Колчинский Э. И. Эволюция эволюции. — Л.: Наука, 1977.

Simpson G. G. Periodicity in vertebrate evolution // Journal of Paleontology , 1952, V. 26, № 3, 359–370.

Colbert E. H. Explosive evolution // Evolution , 1953, V. 7, № 1, 89–90.

Chaline J. Rodents, evolution, and prehistory // Endeavour , 1977, V. 1, № 2, 44–51.

Rokas A., Carroll S. B. Bushes in the tree of life // PLoS Biology , 2006, V. 4, № 11, e352.

Pawlowski J. The new micro-kingdoms of eukaryotes // BMC Biology , 2013, V. 11, № 1, 40.

Walker G., Dacks J. B., Martin Embley T. Ultrastructural description of Breviata anathema, n. gen., n. sp., the organism previously studied as «Mastigamoeba invertens» // Journal of Eukaryotic Microbiology, 2006, V. 53, № 2, 65–78.

Heiss A. A., Walker G., Simpson A. G. B. The flagellar apparatus of Breviata anathema, a eukaryote without a clear supergroup affinity // European Journal of Protistology , 2013, V. 49, № 3, 354–372.

Minge M. A. et al. Evolutionary position of breviate amoebae and the primary eukaryote divergence // Proceedings of the Royal Society of London, B: Biological Sciences , 2009, V. 276, № 1657, 597–604.

Burki , 2014.

Brown M. W. et al. Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads // Proceedings of the Royal Society of London, B: Biological Sciences , 2013, V. 280, № 1769, 20131755.

Cavalier-Smith , 2009.

Cavalier-Smith T., Chao E. E. Phylogeny and evolution of apusomonadida (protozoa: apusozoa): new genera and species // Protist , 2010, V. 161, № 4, 549–576.

Torruella G., Moreira D., Lopez-Garcia P. Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes // Environmental Microbiology Reports , 2017, V. 9, № 2, 113–119.

Brown et al. , 2013.

Paps J. et al. Molecular phylogeny of unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts // Protist , 2013, V. 164, № 1, 2–12.

Cavalier-Smith et al. , 2014.