Михаил Никитин - Происхождение жизни. От туманности до клетки

Attwater J., Wochner A. & Holliger P. In-ice evolution of RNA polymerase ribozyme activity // Nature Chemistry , 2013, vol. 5, pp. 1011–1018. DOI: 10.1038/nchem.1781

Baaske P. et al. Extreme accumulation of nucleotides in simulated hydrothermal pore systems // Proceedings of the National Academy of Sciences , 2007, vol. 104, pp. 9346–9351. DOI: 10.1073/pnas.0609592104

Bailey S., Wing R. A. & Steitz T. A. The Structure of T. aquaticus DNA Polymerase III Is Distinct from Eukaryotic Replicative DNA Polymerases // Cell , 2006, vol. 126, pp. 893–904. DOI: 10.1016/j.cell.2006.07.027

Bali S. et al. Molecular hijacking of siroheme for the synthesis of heme and d1 heme // Proceedings of the National Academy of Sciences , 2011, vol. 108, pp. 18260–18265. DOI: 10.1073/pnas.1108228108

Bar-Even A., Noor E., Flamholz A. & Milo R. Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes // Biochimica et Biophysica Acta (BBA) – Bioenergetics , 2013, vol. 1827, pp. 1039–1047. DOI: 10.1016/j. bbabio.2012.10.013

Barry R. D. The multiplication of influenza virus: II. Multiplicity reactivation of ultraviolet irradiated virus // Virology , 1961, vol. 14, pp. 398–405. DOI: 10.1016/0042–6822(61)90330–0

Baum D. A. & Baum B. An inside-out origin for the eukaryotic cell // BMC Biology , 2014, vol. 12, p. 76. DOI: 10.1186/s12915-014-0076-2

Baymann, F. et al. The redox protein construction kit: pre-last universal common ancestor evolution of energy-conserving enzymes // Philosophical Transactions of the Royal Society of London B: Biological Sciences , 2003, vol. 358, pp. 267–274. DOI: 10.1098/rstb.2002.1184

Baymann, F., Brugna, M., Mühlenhoff, U. & Nitschke, W. Daddy, where did (PS) I come from? // Biochimica et Biophysica Acta (BBA) – Bioenergetics , 2001, vol. 1507, pp. 291–310. DOI: 10.1016/S0005–2728(01)00209–2

Bell, P. J. L. The viral eukaryogenesis hypothesis: a key role for viruses in the emergence of eukaryotes from a prokaryotic world environment // Annals of the New York Academy of Sciences , 2009, vol. 1178, 91–105. DOI: 10.1111/j.1749–6632.2009.04994.x

Bell, P. J. Viral eukaryogenesis: was the ancestor of the nucleus a complex DNA virus? // Journal of molecular evolution , 2001, vol. 53, pp. 251–256. DOI: 10.1007/s002390010215

Bell, P. J. L. Sex and the eukaryotic cell cycle is consistent with a viral ancestry for the eukaryotic nucleus // Journal of theoretical biology , 2006, vol. 243, pp. 54–63. DOI: 10.1016/j. jtbi.2006.05.015

Benner, S. A., Kim, H.-J., Kim, M.-J. & Ricardo, A. Planetary Organic Chemistry and the Origins of Biomolecules // Cold Spring Harbor Perspectives in Biology , 2010, vol. 2, p. a003467. DOI: 10.1101/cshperspect.a003467

Benner, S. A., Kim, H.-J. & Carrigan, M. A. Asphalt, water, and the prebiotic synthesis of ribose, ribonucleosides, and RNA // Accounts of Chemical Research , 2012, vol. 45, pp. 2025–2034. DOI: 10.1021/ar200332w

Benner, S. A., Ricardo, A. & Carrigan, M. A. Is there a common chemical model for life in the universe? // Current Opinion in Chemical Biology , 2004, vol. 8, pp. 672–689. DOI: 10.1016/j. cbpa.2004.10.003

Bernhardt, H. S. & Sandwick, R. K. Purine Biosynthetic Intermediate-Containing Ribose-Phosphate Polymers as Evolutionary Precursors to RNA // Journal of Molecular Evolution , 2014, vol. 1–14. DOI: 10.1007/s00239-014-9640-1

Bokov, K. & Steinberg, S. V. A hierarchical model for evolution of 23S ribosomal RNA // Nature , 2009, vol. 457, pp. 977–980. DOI: 10.1038/nature07749

Borowska, Z. & Mauzerall, D. Photoreduction of carbon dioxide by aqueous ferrous ion: An alternative to the strongly reducing atmosphere for the chemical origin of life // Proceedings of the National Academy of Sciences , 1988, vol. 85, pp. 6577–6580.

Bortnikova, S. B., Gavrilenko, G. M., Bessonova, E. P. & Lapukhov, A. S. The hydrogeochemistry of thermal springs on Mutnovskii Volcano, southern Kamchatka // Journal of Volcanology and Seismology , 2010, vol. 3, pp. 388–404. DOI: 10.1134/S0742046309060025

Braakman, R. & Smith, E. The Emergence and Early Evolution of Biological Carbon-Fixation // PLoS Computational Biology , 2012, vol. 8. DOI: 10.1371/journal.pcbi.1002455

Breslow, R. & Cheng, Z.-L. L-amino acids catalyze the formation of an excess of D-glyceraldehyde, and thus of other D sugars, under credible prebiotic conditions // Proceedings of the National Academy of Sciences , 2010, vol. 107, pp. 5723–5725. DOI: 10.1073/pnas.1001639107

Breslow, R. & Levine, M. S. Amplification of enantiomeric concentrations under credible prebiotic conditions // Proceedings of the National Academy of Sciences , 2006, vol. 103, pp. 12979–12980. DOI: 10.1073/pnas.0605863103

Breslow, R. The origin of homochirality in amino acids and sugars on prebiotic earth // Tetrahedron Letters , 2011, vol. 52, pp. 4228–4232. DOI: 10.1016/j. tetlet.2011.06.002

Briones, C., Stich, M. & Manrubia, S. C. The dawn of the RNA World: Toward functional complexity through ligation of random RNA oligomers // RNA , 2009, vol. 15, pp. 743–749. DOI: 10.1261/rna.1488609

Buchanan, B. B. & Arnon, D. I. A reverse KREBS cycle in photosynthesis: consensus at last // Photosynthesis Research , 1990, vol. 24, pp. 47–53.

Budisa, N. & Schulze-Makuch, D. Supercritical Carbon Dioxide and Its Potential as a Life-Sustaining Solvent in a Planetary Environment // Life , 2014, vol. 4, pp. 331–340. DOI: 10.3390/life4030331

Cahová, H., Winz, M.-L., Höfer, K., Nübel, G. & Jäschke, A. NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs // Nature advance online publication, 2014. DOI: 10.1038/nature14020

Canup, R. M. & Asphaug, E. Origin of the Moon in a giant impact near the end of the Earth's formation // Nature , 2001, vol. 412, pp. 708–712. DOI: 10.1038/35089010

Canup, R. M. & Ward, W. R. A common mass scaling for satellite systems of gaseous planets // Nature , 2006, vol. 441, pp. 834–839. DOI: 10.1038/nature04860

Canup, R. M. Origin of Saturn/'s rings and inner moons by mass removal from a lost Titan-sized satellite // Nature , 2010, vol. 468, pp. 943–946. DOI: 10.1038/nature09661

Cardona, T., Murray, J. W. & Rutherford, A. W. Origin and Evolution of Water Oxidation before the Last Common Ancestor of the Cyanobacteria // Molecular Biology and Evolution , 2015, vol. 32, pp. 1310–1328 (2015). DOI: 10.1093/molbev/msv024

Carter Jr., C. W. & Duax, W. L. Did tRNA Synthetase Classes Arise on Opposite Strands of the Same Gene? // Molecular Cell , 2002, vol. 10, pp. 705–708 (2002). DOI: 10.1016/S1097–2765(02)00688–3

Carter, C. W. et al. The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed // Biology Direct , 2014, vol. 9, pp. 11. DOI: 10.1186/1745-6150-9-11

Cernak, P. & Sen, D. A thiamin-utilizing ribozyme decarboxylates a pyruvate-like substrate. Nature Chemistry , 2013, vol. 5, pp. 971–977. DOI: 10.1038/nchem.1777

Chen, J. & Strous, M. Denitrification and aerobic respiration, hybrid electron transport chains and co-evolution // Biochimica et Biophysica Acta (BBA) – Bioenergetics , 2013, vol. 1827, pp. 136–144. DOI: 10.1016/j. bbabio.2012.10.002

Chen, X., Li, N. & Ellington, A. D. Ribozyme Catalysis of Metabolism in the RNA World // Chemistry & Biodiversity , 2007, vol. 4, pp. 633–655. DOI: 10.1002/cbdv.200790055